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Taxonomy Category

Terms Count
Target Prediction 207
Target Gene 149
miRNA Prediction 144
Expression Profiles 135
Interactions 127
Regulatory Network 118
Association 98
Cancer/Tumor 87
Disease 82
Next Generation Sequencing (NGS) 75
Identification 71
miRNA Binding Site 67
siRNA 66
pre-miRNA 53
The Cancer Genome Atlas (TCGA) 51
Integrated Analysis 51
Functional Annotation 46
Transcription Factors (TFs) 44
Pathway 43
miRNA-Seq 43
miRNA Annotations 39
sncRNA 39
Sequence Annotation 38
lncRNA 37
Enrichment Analysis 37
Differential Expression 35
3'/5' UTR 30
IsomiR 30
Single Nucleotide Polymorphism (SNP) 29
Secondary Structure 29
RNAi 28
RNA-Seq 26
ncRNAs 26
Alignment 24
miRNA Regulation 24
Tissue-specific miRNA 22
Microarray Analysis 21
Classification 21
Integrated Knowledge 19
Off-targets 19
CLIP-Seq 18
Gene Ontology 17
Integration of Tools 17
Visualization 17
Evolution 17
ceRNA 15
Experimentally Validated 15
RNA-binding Protein (RBP) 15
piRNA 15
miRNA Family 14
Argonaute (AGO) 14
Biomarker 13
CircRNA 13
Drug 13
Co-expressed 12
Tissues 12
miRNA Homologs 11
Intergenic/Intronic miRNA 10
Phenotype 10
Secreted/Extracellular/Circulating miRNA 9
Protein-protein Interaction (PPI) 9
Thermodynamics 9
ID Conversion 9
Sequence Motif 8
Hairpin Structure 8
Seed Match 7
miRNA Cluster 7
Normalization 7
Coding Sequence (CDS) 7
PAR-CLIP 7
Tools Gallery 7
Transcriptional Start Sites (TSSs) 7
Pseudo Hairpin 6
Alzheimer's Disease 6
RNA Editing 6
Cis-regulatory Element 6
Mutation 6
Blood 5
Genome Wide Association Study (GWAS) 5
Correlation Analysis 5
High-throughput Screening (HTS) 5
Chemical 5
RNA Modification 5
Expressed Sequence Tag (EST) 5
Environmental Factor 4
Transposable Elements 4
Epigenetic 4
Sequential Mapping 4
Exosome 4
Parkinson's Disease 4
Arm Switching 4
Expression Quantitative Trait Loci (eQTL) 4
miRNA Activity 4
3'/5' Modifications 4
Stem Cell 4
Free Energy 4
Stress 3
Promoter 3
Nomenclature 3
Alternatively Spliced Transcripts 3
Tertiary/Triplex/3D Structures 3
Sequential Trimming 3
Artificial miRNA 3
Cleavage Sites 3
Intragenic miRNA 2
Antisense 2
ChIP-Seq 2
miRNA Publication 2
Methylation 2
CLASH 2
Autophagy 2
Adipogenesis 1
Epilepsy 1
Ontology 1
CRISPR-Cas9 1
Huntington's disease 1
Hybridization 1
DNase-Seq 1
Small Molecules 1
Extracellular Vesicles (EVs) 1
Immunostimulatory 1
Methods Count
Support Vector Machines (SVM) 92
Manually Curated 56
Random Forest 28
Text Mining 25
Hypergeometric Test 13
Linear Regression Analysis 12
k-Nearest Neighbour (kNN) 10
Survival Analysis 10
Artificial Neural Network (ANN) 9
Hidden Markov Model (HMM) 9
k-Means 9
Meta-analysis 8
LASSO 8
Mutual Information 8
Random Walk 7
Naive Bayes 6
Dynamic Programming Algorithms 6
Hierarchical Clustering 6
Logistic Regression 6
Boosting 6
Principal Component Analysis (PCA) 6
Analysis of Variance (ANOVA) 5
Self-Organizing Map (SOM) 5
Smith-Waterman Algorithm 5
Entropy 5
Expectation Maximisation (EM) 5
Bayesian Network (BN) 4
Decision Tree 4
Information Gain 4
C4.5 4
Convolutional Neural Network (CNN) 3
Semantic 3
Biclustering 3
AdaBoost 3
Minimal Redundancy Maximal Relevance (MRMR) 2
Bayesian Inference 2
Genetic Algorithms (GA) 2
Bayesian Statistics 2
Non-negative Matrix Factorization (NMF) 2
Support Vector Regression (SVR) 2
Markov Cluster (MCL) 2
Burrows-Wheeler Transform (BWT) 2
SVM-RFE 2
Complete-linkage Clustering 1
FP-growth Algorithm 1
Wang-Landau Monte Carlo Methods 1
Kemeny Optimal Aggregation (KOA) 1
Conditional Random Fields (CRFs) 1
Gaussian Naive Bayes 1
Kolmogorov–Smirnov Test 1
Molecular Dynamics 1
Semi-Automatic Extraction 1
Grid Search Method (PGS) 1
Deep Belief Network (DBN) 1
Singular Value Decomposition (SVD) 1
Betweenness Centrality Clustering (BCC) 1
Literature-based Discovery 1
Bicliques Merging 1
PageRank 1
Empirical Algorithmics 1
Particle Swarm Optimization (PSO) 1
Empirical Bayes Methods 1
Penalized Generalized Estimating Equations (PGEE) 1
Markov Model 1
k-Medians 1
Markov-Chain Monte-Carlo Methods (MCMC) 1
Fisher's Exact Test 1
Species Count
Arabidopsis 226
Bacteria 99
C. elegans 199
Chicken 167
Fruitfly 218
Human 812
Maize 150
Mouse 359
Other Species 299
Rat 232
Rice 183
Soybean 139
Tomato 138
Virus 119
Wheat 133
Xenopus 128
Zebrafish 178
Platforms Count
Linux/Unix 330
MAC OS 308
Web Based 725
Windows 250
Status Count
Active 919
Dead 116